Cis-meQTLs across different cancer types

In cis-meQTL analysis, we identified 8,028,964 cis-meQTLs at FDR < 0.05 and |r|>=0.3 in 23 cancer types for users to search or browse.

 

e.g., "BLCA"
e.g., "rs11047888"
e.g., "cg25763538"
e.g., "KRAS"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
Methylation probe
Methylation position (hg19)
Gene symbol
Beta
t-stat
r
P-valule
Display
BLCA rs7520272 chr1:227184388 A/G cg10327440 chr1:227177885 CDC42BPA -1.14 -31.65 -0.85 1.45E-108 Box Plot
BLCA rs7541033 chr1:227188371 C/A cg10327440 chr1:227177885 CDC42BPA -1.14 -31.72 -0.85 7.63E-109 Box Plot
BLCA rs7562645 chr2:30766552 A/G cg12454169 chr2:30669597 LCLAT1 1.25 29.84 0.84 1.2E-101 Box Plot
BLCA rs7574695 chr2:33953186 C/T cg04131969 chr2:33951647 MYADML -1.24 -39.35 -0.9 4.23E-136 Box Plot
BLCA rs7604557 chr2:99747829 A/G cg15544633 chr2:99771531 LIPT1;TSGA10 1.18 33.57 0.86 1.0E-115 Box Plot
BLCA rs7705081 chr5:13680079 C/T cg27586797 chr5:13664584 NA -1.1 -30.41 -0.84 8.05E-104 Box Plot
BLCA rs7818125 chr8:91680957 A/G cg16814680 chr8:91681699 NA -1.19 -36.32 -0.88 1.24E-125 Box Plot
BLCA rs7832679 chr8:91676495 C/T cg16814680 chr8:91681699 NA 1.13 32.36 0.86 3.07E-111 Box Plot
BLCA rs7839617 chr8:91685431 C/T cg16814680 chr8:91681699 NA -1.17 -33.21 -0.86 2.02E-114 Box Plot
BLCA rs7840113 chr8:91685814 C/G cg16814680 chr8:91681699 NA -1.15 -31.5 -0.85 5.35E-108 Box Plot
BLCA rs829562 chr2:30695756 T/C cg12454169 chr2:30669597 LCLAT1 1.25 30.97 0.85 5.71E-106 Box Plot
BLCA rs829570 chr2:30684289 G/C cg12454169 chr2:30669597 LCLAT1 1.25 31.74 0.85 6.88E-109 Box Plot
BLCA rs829571 chr2:30683730 A/G cg12454169 chr2:30669597 LCLAT1 1.25 31.92 0.85 1.39E-109 Box Plot
BLCA rs829573 chr2:30682630 A/T cg12454169 chr2:30669597 LCLAT1 1.25 31.27 0.85 4.1E-107 Box Plot
BLCA rs829576 chr2:30680616 C/T cg12454169 chr2:30669597 LCLAT1 1.24 30.97 0.85 5.6E-106 Box Plot